Table of Contents

• Welcome
  • Indices and tables
  • Plotting Gallery
• Getting Started
• Installation
  • Python Installation
  • Pygeostat Installation
    • Additional Software (CCG Members)
  • Create Virtual Environments
    • Using R from Python
• Data Files
  • DataFile Class
    • DataFile Attributes
      • Columns
      • Num Variables
      • Locations
      • Shape
    • Head
    • Rename Columns
    • Drop Columns
    • Check for Duplicate Columns
    • Set Columns
    • Set Variable Columns
    • Set Categorical Dictionary
    • Check DataFile
    • Add Coord
    • Apply Dictionary
    • Describe DataFile
    • Infer Grid Definition
    • File Name String
    • Generate Dictionary
    • GSLIB Column
    • Truncate NaN’s
    • Unique Categories
    • Write file
    • Data Spacing
  • Example Data
  • Input/Ouput Tools
    • Read File
    • Read CSV
    • Read GSLIB Python
    • Fortran Compile for GSB
    • Read GSB
    • Write GSLIB Python
    • Write CSV
    • Write GSB
    • Write VTK
    • Write HDF5 VTK
    • Count Lines in File
    • Write CCG GMM
  • HDF5 I/O
    • Write HDF5
    • Read HDF5
    • Is HDF5
    • Combine Datasets from Multiple Paths
    • Pygeostat HDF5 Class
      • Write Data
      • Read Data
      • Print Contents of HDF5 File
      • Close the HDF5 File
      • Datasets in H5 Store
      • Generate Iterator
  • DictFile Class
    • Read Dictionary
    • Write Dictionary
• Grid Definitions
  • GridDef Class
    • Copy
    • Block Volume
    • Cell Count
    • Convert To 2D
    • Convert Index: 3D to 1D
    • Convert Index: 1D to 3D
    • Coordinate(s) to 1D Index
    • Coordinate(s) to 3D Index
    • Change Block Size
    • Change Block Number
    • Pad Grid
    • Extents
    • Get Coordinates based on Index/Indices
    • Get Slice Index
    • Grid Array
    • Origin
    • Outline Points
    • Sample Random Points from Grid
    • Sample Random Indices from Grid
    • Slice Coordinate
    • Slice Index
    • Vertical Indices
• Statistics
  • CDF
    • Cumulative Distribution Function
    • Percentile from CDF
    • z_percentile
    • Build Indicator CDF
    • Variance From CDF
    • Stdev From CDF
  • Kernel Density Estimation Functions
    • Univariate KDE with StatsModels
    • Multivariate KDE with StatsModels
    • KDE with Scikit-learn
    • KDE with Scipy
  • Weighted Statistics
    • Weighted Mean
    • Weighted Variance
    • Weighted Skewness
    • Weighted Kurtosis
    • Weighted Correlation
    • Weighted Rank Correlation
    • Weighted Covariance
  • Assorted Stats Functions
    • Nearest Positive Definite Correlation Matrix
    • Accuracy Plot Statistics - Simulation
    • Accuracy Plot Statistics - CDF thresholds
  • PostSim
• Plotting Functions
  • Introduction to Plotting with pygeostat
    • Figure Sizes
    • Fonts
    • Selection of Colormaps and Colour Palettes
    • Changing Figure Aesthetics
    • Dealing with Memory Leaks from Plotting
  • Accuracy Plot
  • Location Plot
  • Histogram Plot
  • Histogram Plot (Simulation Check)
  • Slice Plot
  • Slice Plot (Grids)
  • Scatter Plot
  • Scatter Plot (Multivariate)
  • Scatter Plot (Multivariate-Comparison)
  • Correlation Matrix Plot
  • Drill Plot
  • Pit Plot
  • Quantile-Quantile Plot
  • Probability Plot
  • Validation Plot
  • Variogram Plot
  • Loading Plot
  • Contour Plot
  • Exporting Images
  • Set Plot Style
  • GMM Visualizing
    • GmmUtility Class
      • Summary Plot
      • Bivariate Plot
      • Univariate Conditional Plot
• Scripting CCG Executables
  • Program Class
    • Get Parameter File
    • Run Program
    • Write Parameter File
  • Run Programs in Parallel
  • Misc Program Utilities
• Examples
  • Introduction
  • Kriging
  • Boundary Modeling
  • Structural Modeling
  • GMM Visualization
• Core Development Team
• Contribution